PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G13520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 97aa    MW: 10973.7 Da    PI: 10.149
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G13520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.36.4e-21958151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+i+n ++ qvtfskR ng+lKKA+EL vL daeva+i+f  +g+lye++s
  LPERR07G13520.1  9 KQIKNPTRSQVTFSKRCNGLLKKAFELFVLFDAEVALIVFT-HGRLYEFAS 58
                     68**************************************6.6******86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-18159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.586160IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-15323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-19463IPR002100Transcription factor, MADS-box
PfamPF003191.4E-181156IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MVQGRMELKQ IKNPTRSQVT FSKRCNGLLK KAFELFVLFD AEVALIVFTH GRLYEFASAP  60
RYTKKPSSSS SSYHPVSAFP LPRFSLAEKP EIDQSCS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614799.17e-25PREDICTED: MADS-box transcription factor 56
SwissprotA2Z9Q78e-27MAD56_ORYSI; MADS-box transcription factor 56
SwissprotP0C5B28e-27MAD56_ORYSJ; MADS-box transcription factor 56
TrEMBLA0A0D9WZE91e-66A0A0D9WZE9_9ORYZ; Uncharacterized protein
STRINGORGLA10G0119200.12e-24(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.13e-22AGAMOUS-like 14